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The earliest genocidal event recorded is 627AD at Banu Qurayza and was carried out on the orders of Muhammad. There are cases recorded up to the present day. The list is far from exhaustive. In all it is estimated that there may have been as many as 270m deaths of non_muslims due to jihad.
The background to the Banu Qurayza massacre can be found here:
Arab tribes in those days used to form alliances with each other as part of coexistence, as well as mutual support in conflict situations. During the Qainuqa incident, Abdullah Bin Ubayy’s Khazraj tribe was ally of Qainuqa. In a previous conflict, Abdullah’s own life was saved by Qainuqa warriors. So, when Muhammad started preparation to slaughter the Qainuqa men, Abdullah Bin Ubayy firmly intervened on their behalf. The following Sirat quote is very telling of Ibn Ubayy’s relation to the Qainuqa, and of Muhammad’s evil intentions to slaughter them:
Abdullah b. Ubayy b. Salul went to him when God had put them (the Qainuqa tribe) in his power and said, ‘O Muhammad, deal kindly with my clients’ (now they were allies with Khazraj),but the apostle put him off. He repeated the words, and the apostle turned away from , whereupon he thrust his hand into the collar of the apostle’s robe; the apostle was so angry that his face became almost black. He said, ‘confound you, let me go.’ He answered, ‘No, by God, I will not let you go until you deal kindly with my clients. Four hundred men without mail and three hundred mailed protected me from all mine enemies; would you cut them down in one morning? By God, I am a man who fears that circumstances may change.’ The apostle said, ‘You can have them.’ (Ibn Ishaq, The Life of Muhammad, Oxford University Press, 2007, p. 363)
The above quote makes Muhammad’s intentions of slaughtering them en masse clear. To save the lives of his allies, Ibn Ubayy firmly demanded of Muhammad that another option be given to them. He was not going to let Muhammad kill them all in cold blood.
History tells us that Muhammad, in face of Abdullah’s firm intervention, decided to expelled the Qainuqa tribe from Medina, which saved their lives. Although Muhammad took over their homes and property, he stilled suffered a substantial loss by failing to enslave the women and children.
Baun Qainuqa, thus, survived Muhammad’s worst evil, a fate that Banu Qurayza also desired at a later time but was not granted.